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PhysiGym Public
Forked from Dante-Berth/PhysiGymPhysiGym is a tool for applying reinforcement learning to PhysiCell
Python Other UpdatedSep 9, 2025 -
UQ_PhysiCell Public
Forked from heberlr/UQ_PhysiCellThe goal of this package is to perform uncertainty quantification across the entire input space of PhysiCell models (including parameters, initial conditions, and rules) using either a single deskt…
Python UpdatedSep 3, 2025 -
PhysiCell-Studio Public
Forked from PhysiCell-Tools/PhysiCell-StudioPhysiCell Studio is a graphical tool to allow easy editing of a (XML) model, create initial positions of cells, run a simulation, and visualize results. To contribute, fork and make PRs to the deve…
Python GNU General Public License v3.0 UpdatedSep 3, 2025 -
QuantumGRN Public
Forked from cailab-tamu/QuantumGRNQuantum Gene Regulatory Networks with Application to Single-cell Data
Jupyter Notebook MIT License UpdatedSep 3, 2025 -
physicelldataloader Public
Forked from PhysiCell-Tools/python-loaderpython3 physicell data output loader.
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grammar_samples Public
Forked from PhysiCell-Models/grammar_samplesSample models for the PhysiCell grammar / rules paper
Jupyter Notebook UpdatedAug 30, 2025 -
usegalaxy-eu-tools Public
Forked from usegalaxy-eu/usegalaxy-eu-toolsList of tools included in https://usegalaxy.eu
Python MIT License UpdatedAug 15, 2025 -
physicell_install Public
physicell install manual for the big 3 operating systems
BSD 3-Clause "New" or "Revised" License UpdatedAug 9, 2025 -
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tools-iuc Public
Forked from galaxyproject/tools-iucTool Shed repositories maintained by the Intergalactic Utilities Commission
HTML MIT License UpdatedAug 4, 2025 -
physicelldataloader_bioconda Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedJul 23, 2025 -
ecosystem-packages Public
Forked from scverse/ecosystem-packagesRegistry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)
Python BSD 3-Clause "New" or "Revised" License UpdatedJul 23, 2025 -
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compilation_essentials Public
Forked from IUCompilerCourse/python-student-support-codeSupport for for students (Python)
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PhysiCell Public
Forked from MathCancer/PhysiCellPhysiCell: Scientist end users should use latest release! Developers please fork the development branch and submit PRs to the dev branch. Thanks!
C++ UpdatedJun 13, 2025 -
hack2022-10-neuroglancer Public
Forked from IAWG-CSBC-PSON/hack2022-10-neuroglancerChallenge 10: 3D Volume Visualization through Neuroglancer
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mistkit Public
mistkit extends the python3 based qiskit quantum computing language state_drawer function with a misty state output possibility.
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drift_gym Public archive
aganinst the drift between episodes.
C++ GNU General Public License v3.0 UpdatedSep 11, 2024 -
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tr_mechanics Public
Forked from rheiland/tr_mechanicsC++ BSD 3-Clause "New" or "Revised" License UpdatedAug 13, 2024 -
second_cell_defaults_instance Public
Forked from rheiland/second_cell_defaults_instanceC++ UpdatedJun 29, 2024 -
tysserand Public
Forked from VeraPancaldiLab/tysserandFast reconstruction of spatial networks from bioimages.
Python GNU General Public License v3.0 UpdatedMar 12, 2024 -
grn_myeloid_progenitor Public
tellurium anemony implementation form Jan Krumsiek's 2011 publiaction
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physicellflow Public template
physicell nextflow parameter scans and data analysis repo
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phycell Public
physicell python3 spacelab
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pctk Public
Forked from PhysiBoSS/pctkA set of scripts and utilities to analyze PhysiCell/PhisyBoSS simulations
Python BSD 3-Clause "New" or "Revised" License UpdatedJul 25, 2023
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