WDL pipelines for the Sentieon tools
- CCDG fastq to VCF - A Sentieon WDL implementation of the functional equivalence pipeline also known as the CCDG pipeline standard, described at, https://github.com/CCDG/Pipeline-Standardization/blob/master/PipelineStandard.md. More details on the pipeline can be found in Sentieon's functional equivalent appnote.
- Germline DNAseq and DNAscope - WDL implementation of Sentieon's DNAseq and DNAscope pipelines for germline variant calling.