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ctat-mutations Public
Forked from TrinityCTAT/ctat-mutationsMutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19
HTML Other UpdatedNov 9, 2022 -
nhlplusminus Public
An analysis of NHL player plus-minus using python
Jupyter Notebook MIT License UpdatedOct 28, 2022 -
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fflr Public
Forked from k5cents/fflrGet ESPN fantasy football data in R
R Other UpdatedSep 9, 2022 -
nf-VIF Public
Forked from bioinfo-pf-curie/nf-VIFA Nextflow-based Virus Insertion Finder
Nextflow Other UpdatedAug 31, 2022 -
VIRUSBreakend Public
WDL for running PapenfussLab's VIRUSBreakend
WDL MIT License UpdatedJul 12, 2022 -
VirusFinder2_VERSE Public
A copy of VirusFinder2/VERSE, used for identifying viral integrations.
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ViFi Public
Forked from sara-javadzadeh/ViFiPipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.
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VirTect Public
Forked from WGLab/VirTectDetection of viruses from RNA-Seq on human samples
WDL UpdatedJan 11, 2022 -
ViralFusionSeq Public
Forked from TF-Chan-Lab/ViralFusionSeqAccurately discover viral integration events and fusion transcripts
Perl GNU General Public License v3.0 UpdatedJan 6, 2022 -
CTAT-VirusIntegrationFinder Public
Forked from TrinityCTAT/CTAT-VirusIntegrationFinderPython UpdatedNov 22, 2021 -
infercnvApp Public
Forked from broadinstitute/infercnvAppThis is an R shiny app created as a user friendly way to run the R package infercnv. Infercnv is used to explore tumor single cell RNA-Seq data to identify evidence for somatic large-scale chromoso…
R Other UpdatedSep 20, 2021 -
infercnvNGCHM Public
Forked from broadinstitute/infercnvNGCHMinferCNV interface to using NGCHM next generation heat maps
R UpdatedJul 17, 2021 -
infercnv Public
Forked from broadinstitute/infercnvInferring CNV from Single-Cell RNA-Seq
R Other UpdatedJul 13, 2021 -
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SNPiR-Python Public
Python implementation of the original SNPiR code
Python MIT License UpdatedApr 1, 2021 -
RVBLR Public
This is a reimplementation of the RVBoost code.
Python MIT License UpdatedMar 11, 2021 -
CTAT-SPLICING Public
Forked from TrinityCTAT/CTAT-SPLICINGdetection of cancer splicing aberrations
Perl UpdatedJul 1, 2020 -
RnaVariantBenchmarking Public
Forked from TrinityCTAT/RnaVariantBenchmarkingcode for running alternative rna-based variant detection tools and benchmarking
Python UpdatedMay 18, 2020 -
NGCHMR Public
Forked from bmbroom/NGCHMRAn R library for creating Next-Generation Clustered Heat Maps (NG-CHM)
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HoneyBADGER Public
Forked from JEFworks-Lab/HoneyBADGERHMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data
R GNU General Public License v3.0 UpdatedNov 4, 2018 -
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