5.0.4

2026-02-11 (Date of Last Commit)

• Fixed mitofinder logic to properly handle cases where we deduplicate mitochondrial contigs from the genome fasta

3.0.0

2026-02-10 (Date of Last Commit)

Breaking changes

• Imputed homozygous reference sites have been removed from the imputed_multi_sample_vcf output.
• Imputed homozygous reference sites are available in a new sites-only VCF output imputed_hom_ref_sites_only_vcf

5.0.4

2026-02-11 (Date of Last Commit)

• Fixed mitofinder logic to properly handle cases where we deduplicate mitochondrial contigs from the genome fasta

2.5.1

2026-2-04 (Date of Last Commit)

• Update input_qc_version to 1.3.0 to match the latest changes in InputQC wdl.

1.3.0

2026-02-04 (Date of Last Commit)

• Lower variant number check to 3 million from 10 million to further prevent whole genome inputs from being submitted

1.3.0

2026-02-04 (Date of Last Commit)

• Lower variant number check to 3 million from 10 million to further prevent whole genome inputs from being submitted

3.3.7

2026-01-21 (Date of Last Commit)

• Moved inputs into new Google buckets. This change does not affect the outputs of the pipeline

3.3.7

2026-01-21 (Date of Last Commit)

• Moved inputs into new Google buckets. This change does not affect the outputs of the pipeline

2.2.8

2026-01-21 (Date of Last Commit)

• Moved inputs into new Google buckets. This change does not affect the outputs of the pipeline

1.2.2

2026-01-29 (Date of Last Commit)

• Moved inputs into new Google buckets. This change does not affect the outputs of the pipeline
• Updated the ReblockGVCF.wdl to be compatible with AWS. This changes does not affect the outputs of the pipeline