Multigene phylogeny of the scyphozoan jellyfish family Pelagiidae reveals that the common U.S. Atlantic sea nettle comprises two distinct species (Chrysaora quinquecirrha and C. chesapeakei)

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Introduction

Materials and Methods

Sample collection

DNA extraction, PCR amplification and DNA sequencing

Phylogenetic reconstruction

Morphological analysis of Chrysaora quinquecirrha

Cnidome of Chrysaora quinquecirrha

Results

Sequence data characteristics and phylogenetic inference

Macromorphological and nematocyst analyses

Discussion

Genus-level systematic inference

Interspecific evolutionary relationships and geographic patterns

Species-level systematic inference

Chrysaora quinquecirrha and Chrysaora chesapeakei

Chrysaora in the Caribbean

Chrysaora melanaster and Chrysaora pacifica

Chrysaora africana/fulgida

Mawia benovici

Systematics

  • Holotrichous A-isorhizas: 20.15 ± 0.33 × 11.13 ± 0.24 μm;

  • Holotrichous a-isorhizas: 8.27 ± 0.49 × 4.22 ± 0.07 μm;

  • Holotrichous O-isorhizas: 21.63 ± 0.39 × 18.91 ± 0.78 μm;

  • Heterotrichous microbasic rhopaloids: 13.58 ± 0.19 × 8.09 ± 0.09 μm;

  • Holotrichous A-isorhizas: 25.66 ± 0.83 × 19.16 ± 0.54 μm;

  • Holotrichous a-isorhizas: 7.77 ± 0.20 × 4.17 ± 0.10 μm;

  • Holotrichous O-isorhizas: 22.02 ± 0.30 × 19.95 ± 0.24 μm;

  • Heterotrichous microbasic rhopaloids: 12.35 ± 0.47 × 8.55 ± 0.55 μm.

  • Holotrichous A-isorhizas: 26.21 ± 0.50 × 19.74 ± 0.55 μm;

  • Holotrichous a-isorhizas: 7.88 ± 0.13 × 4.29 ± 0.07 μm;

  • Holotrichous O-isorhizas: 23.10 ± 0.43 × 20.75 ± 0.62 μm;

  • Heterotrichous microbasic rhopaloids: 12.73 ± 0.22 × 8.29 ± 0.13 μm.

Supplemental Information

Table S1: Geographic source regions of samples used for morphological analyses in this study.

Collected samples were collected by the authors while museum specimens all came from the Smithsonian National Museum of Natural History. Sites were categorized between coastal and estuarine regions based on geography, knowledge of regions and average salinity where available from data buoys, but deemed coastal if in doubt. *For collected regions, some specimens were sequenced for mitochondrial 16S to assign to a species/clade in Fig. 5.

DOI: 10.7717/peerj.3863/supp-1

Table S2: PCR primers employed in this study (A = PCR amplification; S = DNA Sequencing).

DOI: 10.7717/peerj.3863/supp-2

Table S3: Pairwise genetic distance matrix (COI) for major clades/species in the Pelagiidae.

Values below the diagonal are minimum pairwise genetic distances computed using the Kimura 2-parameter substitution model (Kimura, 1980) in MEGA 7.0.14 (Kumar, Stecher & Tamura, 2016). Values in bold represent maximum within clade divergences. Column/row numbers represent major species/clades: 1. Chrysaora achlyos, 2. C. africana, 3. C. chesapeakei, 4. Chrysaora c.f. chesapeakei, 5. C. chinensis, 6. C. colorata, 7. C. fulgida, 8. C. fuscescens, 9. C. hysoscella, 10. C. lactea, 11. C. melanaster, 12. C. pacifica, 13. C. plocamia, 14. C. quinquecirrha, 15. Chrysaora sp. 1, 16. Pelagia benovici, 17. P. noctiluca, 18. Sanderia malayensis, 19. Cyanea capillata.

DOI: 10.7717/peerj.3863/supp-3

Table S4: Pairwise genetic distance matrix (16S) for major clades in the Pelagiidae.

Values below the diagonal are minimum pairwise genetic distances computed using the Kimura 2-parameter substitution model (Kimura, 1980) in MEGA 7.0.14 (Kumar, Stecher & Tamura, 2016). Values in bold represent maximum within clade divergences. Column/row numbers represent major taxa/clades: 1. Chrysaora achlyos, 2. C. africana, 3. C. chesapeakei, 4. Chrysaora c.f. chesapeakei, 5. C. chinensis, 6. C. colorata, 7. C. fulgida, 8. C. fuscescens, 9. C. hysoscella, 10. C. lactea, 11. C. melanaster, 12. C. pacifica, 13. C. plocamia, 14. C. quinquecirrha, 15. Pelagia benovici, 16. P. noctiluca, 17. Sanderia malayensis, 18. Cyanea capillata.

DOI: 10.7717/peerj.3863/supp-4

Table S5: Pairwise genetic distance matrix (28S) for major clades in the Pelagiidae.

Values below the diagonal are minimum pairwise genetic distances computed using Kimura 2-parameter substitution model (Kimura 1980) in MEGA 7.0.14 (Kumar, Stecher & Tamura, 2016). Values in bold represent maximum within clade divergences. Column/row numbers represent major taxa/clades: 1. Chrysaora achlyos, 2. C. africana, 3. C. chesapeakei, 4. Chrysaora c.f. chesapeakei, 5. C. chinensis, 6. C. colorata, 7. C. fulgida, 8. C. fuscescens, 9. C. hysoscella, 10. C. lactea, 11. C. melanaster, 12. C. pacifica, 13. C. plocamia, 14. C. quinquecirrha, 15. Pelagia benovici, 16. P. noctiluca, 17. Sanderia malayensis, 18. Cyanea capillata.

DOI: 10.7717/peerj.3863/supp-5

Figure S1: Unknown pelagiid jellyfish from Dakar, Senegal.

Photograph of unknown pelagiid jellyfish from Dakar, Senegal ultimately assigned to the species Mawia benovici based on DNA sequence data (28S and COI). The jellyfish bell was approximately 5–6 cm. Photograph courtesy of Lucy Keith-Diagne.

DOI: 10.7717/peerj.3863/supp-6

Figure S2: Tentacle Nematocyst Sizes.

Average size measurements based on 10 nematocysts per individual (length vs. width) for nematocysts: A) a-isorhizas; B) O-isorhizas; C) heterotrichous microbasic birhopaloids. Error bars represent standard deviation values. Squares represent nematocysts from estuarine Atlantic and Gulf of Mexico medusae (C. chesapeakei), while circles represent nematocysts from coastal Atlantic medusae (C. quinquecirrha). All animals with 16S sequences matching the C. chesapeakei clade appear in red, while those whose sequences matched the C. quinquecirrha clade appear in blue. Triangles represent average values from Papenfuss (1936) for morphs identified as Dactylometra quinquecirrha (gray) or Dactylometra quinquecirrha var. chesapeakei (white). Nematocyst examples are to the right of each graph. All nematocysts are of average size for the nematocyst type and species. Photographs have been resized so that all error bars are the same size on the page to allow size comparisons.

DOI: 10.7717/peerj.3863/supp-7

Figure S2: Tentacle Nematocyst Diversity.

A) Mosaic plot showing the relative proportions of nematocyst types in distal, medial and proximal tentacle regions. O-isorhiza and birhopaloid nematocysts vary markedly in abundance across regions. Plot drawn using R package vcd (Meyer, Zeileis & Hornik, 2016). Proportions of nematocysts types vary significantly across tentacle regions; shading indicates significant departures from expected values (red = negative residuals, blue = positive residuals). B) Non-metric multidimensional scaling of similarities in overall (proximal, medial and distal regions) proportions of all four nematocyst types. Squares represent nematocysts from estuarine Atlantic and Gulf of Mexico medusae, while circles represent nematocysts from coastal Atlantic medusae. All animals with 16S sequences matching the C. chesapeakei clade appear in red, while those whose sequences matched the C. quinquecirrha clade appear in blue.

DOI: 10.7717/peerj.3863/supp-8

Raw data from this manuscript included morphological and tentacle nematocyst data.

DOI: 10.7717/peerj.3863/supp-9

Additional Information and Declarations

Competing Interests

The authors declare that they have no competing interests.

Author Contributions

Keith M. Bayha conceived and designed the experiments, performed the experiments, analyzed the data, contributed reagents/materials/analysis tools, wrote the paper, prepared figures and/or tables, reviewed drafts of the paper.

Allen G. Collins conceived and designed the experiments, analyzed the data, contributed reagents/materials/analysis tools, wrote the paper, reviewed drafts of the paper.

Patrick M. Gaffney conceived and designed the experiments, analyzed the data, contributed reagents/materials/analysis tools, wrote the paper, reviewed drafts of the paper.

DNA Deposition

The following information was supplied regarding the deposition of DNA sequences:

MF141552MF141718; MF167556MF167568

Funding

This work was supported by Lerner-Gray Grant for Marine Research (American Museum of Natural History) to Keith M. Bayha. There was no additional external funding received for this study. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.

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