Abstract
This work was designed to study the interaction between 5-Methyluridine and human serum albumin (HSA) under simulative physiological conditions using fluorescence spectroscopy in combination with molecular modeling technique for the first time. Static quenching was suggested by the fluorescence measurement. The binding constants (K) were calculated according to the relevant fluorescence data at different conditions including temperature. Thermodynamic parameter, different conditions including temperature to determine enthalpy change and entropy change, indicating the hydrophobic force played a major role in the binding interaction between 5-Methyluridine and HSA. The experimental result was in correspondence with molecular modeling theory.








Similar content being viewed by others
References
Peters T (1985) Adv Protein Chem 37:161–245
He XM, Carter DC (1992) Nature 358:209–215
Liu JQ, Tian JN, Tian X, Hu ZD, Chen XG (2004) Bioorg Med Chem 12:469–474
Li Y, He WY, Liu JQ, Sheng FL, Hu ZD, Chen XG (2005) Biochim Biophys Acta 1722:15–21
Bian QQ, Liu JQ, Tian JN, Hu ZD (2004) Int J Biol Macromol 34:275–279
Lloyd JBF, Evett IW (1977) Anal Chem 49:1710–1715
Liu JQ, Tian JN, He WY, Xie JP, Hu ZD, Chen XG (2004) Pharm Biomed Anal 35:671–677
Cui FL, Zhang QZ, Yao XJ, Luo HX, Yang Y, Qin LX, Qu GR, Lu Y (2008) Pestic Biochem Phys 90:126–134
Isono K (1988) J Antibiotics 12:1711–1739
Tao WA, Wu LM, Cooks RG, Wang F, Begley JA, Lampert B (2001) J Med Chem 44:3541–3544
Wang BJ, Huang K (1987) Chinese J Pharmaceuticals 18:378–382
Shiragami H, Ineyama T, Uchida Y, Izawa K (1996) J Nucleosides & Nucleotides 15:47–58
SYBYL Software (2003) Version 6.9.1, St. Louis, Tripos Associates Inc
Morris GM, Goodsell DS, Huey R, Olson AJ (1996) J Comput-Aided Mol Des 10:296–304
Morris GM, Goodsell DS, Halliday RS, Huey R, Hart WE, Belew RK, Olson AJ (1998) J Comput Chem 19:1639–1662
Carter DC, Ho JX (1994) Adv Protein Chem 45:153–203
Sulkowska A, Bojko B, Rόwnicka J, Sulkowski WW (2006) J Mol Struct 792–793:249–256
Trynda-Lemiesz L, Keppler BK, Koztowski H (1999) J Inorg Biochem 73:123–128
Miller JN (1979) Proc Anal Div Chem Soc 16:203–208
Chang XJ, Huang Y, He Q (2005) Acta Chim Sinica 63:223–228
Chen GZ, Huang XZ, Xu JG, Zheng ZZ, Wang ZB (1990) Methods of fluorescence analysis, 2nd edn. Science Press, Beijing
Lakowicz JR, Weber JG (1973) Biochem 12:4161–4170
Ware WR (1962) J Phys Chem 66:455–458
Leckband DA (2000) Rev Biophys Biomol Struct 29:1–26
Ross PD, Subramanian S (1981) Biochem 20:3096–3102
Neméthy G, Scheraga HA (1962) J Phys Chem 66:1773–1789
Timasheff SN (1972) In: Peeters H (ed) Proteins of biological fluids. Pergamon, Oxford, pp 511–519
Förster T (1996) In: Sinanoglu O (ed) Modern quantum chemistry, 3. Academic, New York, p 93
Yang P (1991) The guide bioinorganic chemistry. Xi’an Jiaotong Press
Wu CW, Stryer L (1972) Proc Natl Acad Sci USA 69:1104–1108
Lakowicz JR (1983) Principles of fluorescence spectroscopy, Chapter 10. Plenu Press, New York 10
Cui FL, Fan J, Li JP, Hu ZD (2004) Bioorg Med Chem 12:151–157
He WY, Li Y, Tian JN, Liu HX, Hu ZD, Chen XG (2005) J Photochem Photobiol A 174:53–61
Liang H, Huang J, Tu CQ, Zhang M, Zhou YQ, Shen PW (2001) J Inorg Biochem 85:167–171
Carter DC, He XM, Munson SH, Twigg PD, Gernert KM, Broom MB, Miller TY (1989) Science 244:1195–1198
Petitpas I, Bhattacharya AA, Twine S, East M, Curry S (2001) J Biol Chem 276:22804–22809
Acknowledgments
This work was sponsored by the Nature Science Foundation of China (Nos. 20673034, 20772024), the special foundation of Chinese Ministry of Education in 2006, for Dr universities teaching and scientific research (No.20060476001) and Department of Education of Henan Province (No.2006150012).
Author information
Authors and Affiliations
Corresponding author
Rights and permissions
About this article
Cite this article
Cui, FL., Yan, YH., Zhang, QZ. et al. A study on the interaction between 5-Methyluridine and human serum albumin using fluorescence quenching method and molecular modeling. J Mol Model 16, 255–262 (2010). https://doi.org/10.1007/s00894-009-0548-4
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s00894-009-0548-4